I used z3 theorem prover to assess LLM output, which is a pretty decent SAT solver. I considered the LLM output successful if it determines the formula is SAT or UNSAT correctly, and for SAT case it needs to provide a valid assignment. Testing the assignment is easy, given an assignment you can add a single variable clause to the formula. If the resulting formula is still SAT, that means the assignment is valid otherwise it means that the assignment contradicts with the formula, and it is invalid.
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It’s also worth noting that even if alternatives superior to agar were found, scientists are reluctant to abandon established protocols (even when microbiologists do use other jellies, they often still add agar to the mix, for example, to increase the gel strength of the solid media). As agar has been the standard gelling agent in microbiology for around 150 years, an enormous infrastructure of standardized methods, reference values, and quality control procedures has emerged around its specific properties. Switching to a different medium (even a superior one) means results may not be directly comparable to decades of published literature or to other laboratories’ findings.